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Biomimetic Materials Lab.

Publication

Research Papers

37. Lee, Y. J.; Kim, H.; Choi, J.; Hong, S.; Kim, S. H.; Choi, C. H.*; Seo, J.* Converting natural antibiotics to catalysts: cooperative rate enhancement of Cu-daptomycin for use as a multicopper catalyst in O2 activation and electrochemical O2 evolution reactions. 2019, submitted ( equal contribution).

36. Kim, S.; Nam, H. Y.; Lee, J.*; Seo, J.* Mitochondria-targeting peptides and peptidomimetics: recent progress and design principles. Biochemistry 2019, accepted for publication.

35. Yang, W.; Jo, J.; Oh, H.; Lee, H.*; Chung, W.-J.*; Seo, J.* Peptoid helix displaying flavone and porphyrin: synthesis and intramolecular energy transfer. J. Org. Chem. 2019, in press ( equal contribution) [DOI: 10.1021/acs.joc.9b02358].

34. Im, S. W.; Ha, H.; Yang, W.; Jang, J. H.; Kang, B.; Seo, D. H.; Seo, J.*; Nam, K. T.* Light polarization dependency existing in the biological photosystem and possible implications in artificial antenna systems. Photosynth. Res, 2019, in press ( equal contribution).

33. Goh, B.; Choi, J.; Kang, J.-A.; Park, S.-G.; Seo, J.*; Kim, T.-Y.* Development of a mass spectrometric screening assay for hepatitis B virus inhibitors. J. Pharmaceut. Biomed. 2019, in press ( equal contribution).

32. Koo, H. B.; Seo, J.* Antimicrobial peptides under clinical investigation. Peptide Science 2019, e24122 [DOI: 10.1002/pep2.24122].

31. Lee, Y. J.; Kang, B.; Seo, J.* Metalloporphyrin dimers bridged by a peptoid helix: host-guest interaction and chiral recognition. Molecules 2018, 23, 2741 [DOI: 10.3390/molecules23112741].

30. Lee, Y.; Seo, J.* Oxopiperazine capping: formation of oxopiperazine-containing peptoids through C-terminal cyclization. Tetrahedron Lett. 2018, 59, 3946-3949. [doi.org/10.1016/j.tetlet.2018.09.047].

29. Lee, Y. J.; Kang, D.; Seo, J.* Facile method for the synthesis of triazole- and tetrazole-containing peptoids on a solid support. Tetrahedron Lett. 2018, 59, 3311-3316. [doi.org/10.1016/j.tetlet.2018.07.043] ( equal contribution).

28. Nam, H. Y.; Hong, J.-A.; Choi, J.; Shin, S.; Cho, S. K.; Seo, J.*; Lee, J.* Mitochondria targeting peptoids. Bioconjugate Chem. 2018, 29, 1669-1676. [DOI:10.1021/acs.bioconjchem.8b00148] ( equal contribution).

27. Lee, J.; Kang, D.; Choi, J.; Huang, W.; Wadman, M.; Barron, A. E.*; Seo, J.* Effect of side chain hydrophobicity and cationic charge on antimicrobial activity and cytotoxicity of helical peptoids. Bioorg. Med. Chem. Lett. 2018, 28, 170-173. [https://doi.org/10.1016/j.bmcl.2017.11.034] (* Co-corresponding authors)

26. Yang, W.; Kang, B.; Voelz, V. A.*; Seo, J.* Control of porphyrin interactions via structural changes of peptoid scaffold. Org. Biomol. Chem. 2017,15, 9670-9679.

25. Hong, J.-A.; Choi, N.-E.; La, Y. -K.; Nam, H. Y.; Seo, J.; Lee, J.* Development of a smart activity-based probe to detect subcellular activity of asparaginyl endopeptidase in living cells. Org. Biomol. Chem. 2017, 15, 8018-8022.

24. Jang, L.; Kim, S.; Seo, J.; Lee, J. Y.* Facile and Controllable Electrochemical Fabrication of Cell-Adhesive Polypyrrole Electrodes Using Pyrrole-RGD Peptides. Biofabrication 2017, 9, 045007.

23. Kang, B.; Yang, W.; Lee, S.; Mukherjee, S.; Forstater, J.; Kim, H.; Goh, B.; Kim, T.; Voelz, V. A.*; Pang, Y.*; Seo, J.* Precisely tunable energy transfer system using peptoid helix-based molecular scaffold. Sci. Rep. 2017, 7, 4786.

22. Kim, Y.; Kang, B.; Anh, H.; Seo, J.; Nam, K. T.* Plasmon enhanced fluorescence based on porphyrin-peptoid hybridized nanoparticle platform. Small 2017, 13,1700071.

21. Lee, Y. J.; Chung, S.; Ahn, Y. D.; Kang, B.; Lee, J. Y.; Seo, J.* Self-assemblying water-soluble helical rod-coil peptoid amphiphiles. Bull. Korean Chem. Soc. 2017, 38, 38-43.

20. Lee, S.; Ahn, Y.; Mun, H.; Goh, B.; Kim, T.; Seo, J.*; Kim, M.* Solid-phase synthesis of folate-chlorin conjugates for selective photodynamic therapy and the effect of linker variation. Bull. Korean Chem. Soc. 2016, 37, 2036-2040.

19. Kang, S.; Lee, S.; Yang, W.; Seo, J.; Han, M. S.* A direct assay of butyrylcholinesterase activity using a fluorescent substrate. Org. Biomol. Chem. 2016, 14, 8815-8820.

18. Nam, H. Y.; Seo, J.* Postsynthetic modification of peptoids via the Suzuki-Miyaura cross-coupling reaction. Peptide Science 2016, 106, 82-88.

17. Lee, J.; Huang, W; Broering, J. M.; Barron, A. E.*; Seo, J.* Prostate Tumor Specific Peptide-Peptoid Hybrid Prodrugs. Bioorg. Med. Chem. Lett. 2015, 25, 2849-2852. (* Co-corresponding authors).

16. Shin, H.; Kang, C.; Yoon, M.*; Seo, J.* Peptoid Helicity Modulation: Precise Control of Peptoid Secondary Structures via Position-Specific Placement of Chiral Monomers. Chem. Comm. 2014, 50, 4465-4468. (* Co-corresponding authors).

15. Huang, W.#; Seo, J.#; Willingham, S. B.; Czyzewski, A. M.; Gonzalgo, M. L.; Weissman, I. L.; Barron, A. E. Learning from Host-Defense Peptides: Cationic, Amphipathic Peptoids with Potent Anticancer Activity. PLoS One 2014, 9, e90397 (# Authors are equally contributed to this article).

14. Kang, B.; Chung, S.; Ahn, Y.; Lee, J.; Seo, J.* Porphyrin-peptoid conjugates: Face-to-face display of porphyrins on peptoid helices. Org. Lett. 2013, 15, 1670-1673.

13. Huang, W.; Seo, J.; Lin, J. S.; Barron, A. E. Peptoid transporters: effects of cationic, amphipathic structure on their cellular uptake. Mol. Biosyst. 2012, 8, 2626-2628.

12. Seo, J.#; Ren, G.#; Liu, H.; Miao, Z.; Park, M.; Wang, Y.; Miller, T. M.; Barron, A. E.; Cheng, Z. In Vivo Biodistribution and Small Animal PET of 64Cu Labeled Antimicrobial Peptoids. Bioconjugate Chem. 2012, 23, 1069-1079. (# Authors are equally contributed to this article / Evaluated Article in Faculty of 1000 Biology)

11. Seo, J.; Lee, B-C.; Zuckermann, R. N. Peptoids: Synthesis, Characterization and Nanostructures. Comprehensive Biomaterials 2011, vol.2, 53-76 (book chapters).

10. Seo, J.; Barron, A. E.; Zuckermann, R. N. Novel peptoid building blocks: Synthesis of functionalized aromatic helix-inducing submonomers. Org. Lett. 2010, 12, 492-495.

9. Seo, J.; Michaelian, N.; Owens, S. C.; Dashner, S. T.; Wong, A. J.; Barron, A. E.; Carrasco, M. R. Chemoselective and Microwave-Assisted Synthesis of Glycopeptoids. Org. Lett. 2009, 11, 5210-5213.

8. Silverman, R. B.; Lawton, G. R.; Ranaivo, H. R.; Chico, L. K.; Seo, J.; Watterson, D. M. Effect of potential amine prodrugs of selective neuronal nitric oxide synthase inhibitors on blood-brain barrier penetration. Bioorg. Med. Chem. 2009, 17, 7593-7605.

7. Dohm, M. T.; Seurynck-Servoss, S. L.; Seo, J.; Zuckermann, R. N.; Barron, A. E. Close mimicry of lung surfactant protein B by “clicked” dimers of helical, cationic peptoids. Biopolymers 2009, 92, 538-553.

6. Ji, H.; Erdal, E. P.; Litzinger, E. A.; Seo, J.; Zhu, Y.; Xue, F.; Fang, J.; Huang, J.; Silverman, R. B. Selective neuronal nitric oxide synthase inhibitors. Frontiers in Medicinal Chemistry, Reitz, A. B.; Choudhary, M. I.; Atta-ur-Rahman, Editors; Bentham Science Publishers, Volume 4, 2009, pp 842-882.

5. Seo, J.; Igarashi, J.; Li, H.; Martásek, P.; Roman, L. J.; Poulos, T. L.; Silverman, R. B. Structure-based design and synthesis of Nω-nitro-L-arginine-containing peptidomimetics as selective inhibitors of neuronal nitric oxide synthase. Displacement of the heme structural water. J. Med. Chem. 2007, 50, 2089-2099.

4. Seo, J.; Martásek, P.; Roman, L. J.; Silverman, R. B. Selective L-nitroargininylaminopyrrolidine and L-nitroargininylaminopiperidine neuronal nitric oxide synthase inhibitors. Bioorg. Med. Chem. 2007, 15, 1928-1938.

3. Seo, J.; Silverman, R. B. Synthesis of arginine-containing hydroxamate dipeptidomimetics. Tetrahedron Lett. 2006, 47, 4069-4073.

2. Mbadugha, B. N. A.; Seo, J.; Ji, H.; Martásek, P.; Roman, L. J.; Shea, T. M.; Li, H.; Poulos, T. L.; Silverman, R. B. Hydroxyl-terminated peptidomimetic inhibitors of neuronal nitric oxide synthase. Bioorg. Med. Chem. 2006, 14, 3681-3690.

1. Erdal, E. P.#; Litzinger, E. A.#; Seo, J.#; Zhu, Y.#; Ji, H.#; Silverman, R. B. Selective neuronal nitric oxide synthase inhibitors. Curr. Top. Med. Chem. 2005, 5, 603-624. (# Authors are equally contributed to this review article).

Patents

5. “Antimicrobial peptoids with improved selectivity and use thereof", Seo, J.; Nam, H. Y.; Choi, J. U.S. Patent (Registration Number: 2019/0284238), 2019. 9. 19.

4. "선택성이 개선된 항균 펩토이드 및 이의 용도", 서지원, 남호연, 최지은, Korean Patent (Filing Number: 10-2019-0031160), 2019. 3. 19.

3. “Porphyrin-peptoid conjugates”, Seo, J.; Kang, B. Japanese Patent (Registration Number: 5907936), 2016. 4. 1.

2. “Porphyrin-peptoid conjugate and the preparation process thereof”, Seo, J.; Kang, B. U.S. Patent (Registration Number: 9,263,194), 2016, 2. 16.

1. 포피린-펩토이드 공액체 이의 제조방법”, 서지원, 강보영, Korean Patent (Registration Number: 1576850), 2015. 12. 7.

Books

1. Experiments in General Chemistry (일반화학실험), 서지원, 조춘실, 이연재, 2017.12. 28. GIST Press

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